2022-11-09T21:36:55 n25697

Liquid chromatography ozone-induced dissociation mass spectrometry data - fatty acid discoveries in the human lipidome (OzFAD workflow)

Viewed: 54

The data collection presented here underpins the following paper: 

OzFAD: Ozone-enabled fatty acid discovery reveals unexpected diversity in the human lipidome. Jan Philipp Menzel, Reuben S.E. Young, Aurélie H. Benfield, Julia Scott, Lisa M. Butler, Sónia Troeira Henriques, Berwyck L.J. Poad, Stephen J. Blanksby. bioRxiv 2022.10.24.513604; doi: https://doi.org/10.1101/2022.10.24.513604

Code availability statement: Python source code, Windows batch files and associated files are publicly available at: github.com/jphmenzel/jpmlipidomics.

For more information on data analysis, please read the 'General data analysis', 'Data analysis protocol for direct infusion by loop injection', 'Data analysis protocol for data Independent acquisition; UPLC-OzID-MS' and 'Data analysis protocol for data dependent acquisition; UPLC-OzID-MS/MS' sections of the associated paper. 

Geographical area of data collection

kmlPolyCoords
153.029197,-27.478244

Publications

OzFAD: Ozone-enabled fatty acid discovery reveals unexpected diversity in the human lipidome. Jan Philipp Menzel, Reuben S.E. Young, Aurélie H. Benfield, Julia Scott, Lisa M. Butler, Sónia Troeira Henriques, Berwyck L.J. Poad, Stephen J. Blanksby bioRxiv 2022.10.24.513604; doi: http://dx.doi.org/10.1101/2022.10.24.513604

Research areas

Fatty acid
LC-MS
Ozon-induced dissociation
Physical chemistry
MCF7
Analytical chemistry
Skyline
Other chemical sciences
Human plasma
LNCaP
SCD-1
Cancer
Non-methylene interrupted fatty acid
Lipidomics

Cite this collection

Menzel, Jan Philipp; Young, Reuben S.E.; Benfield, Aurelie H.; Scott, Julia S.; Butler, Lisa M.; Henriques, Sonia T.; Poad, Berwyck L.J.; Blanksby, Stephen J.; (2022): Liquid chromatography ozone-induced dissociation mass spectrometry data - fatty acid discoveries in the human lipidome (OzFAD workflow). Queensland University of Technology. (Dataset) https://doi.org/10.25912/RDF_1667992514317

Partner institution

South Australian Health and Medical Research Institute, Adelaide https://sahmri.org.au/
Translational Research Institute, Brisbane https://www.tri.edu.au/translational-research-institute-australia
South Australian Immunogenomics Cancer Institute and Freemasons Centre for Male Health and Wellbeing, University of Adelaide https://www.adelaide.edu.au/saigenci/about-saigenci

Data file types

Raw data (Waters Synapt G2-Si LC-OzID-MS and direct infusion MS acquisitions) and transition lists that can be used to view the raw data in Skyline (Skyline Mass Spectrometry Environment).

Licence


Creative Commons Attribution-NonCommercial-No Derivatives 4.0 (CC-BY-NC-ND)
http://creativecommons.org/licenses/by-nc-nd/4.0/

Copyright

© Queensland University of Technology, 2022.

Dates of data collection

From 2020-08-25 to 2022-10-21

Connections

Has association with
Berwyck Poad  (Researcher)
Jan Philipp Menzel  (Researcher)
Reuben Young  (Researcher)
Has chief investigator
Stephen Blanksby  (Researcher)

Contacts

Other

Date record created:
2022-10-25T12:42:11
Date record modified:
2022-11-09T21:36:55
Record status:
Published - Open Access