2022-03-08T12:55:41 n26538

Quantitative analysis of tumour spheroid structure

Viewed: 32

Code and associated data for the following preprint:

AP Browning, JA Sharp, RJ Murphy, G Gunasingh, B Lawson, K Burrage, NK Haass, MJ Simpson. 2021 Quantitative analysis of tumour spheroid structure. eLife http://dx.doi.org/https://doi.org/10.7554/eLife.73020

Data comprises measurements relating to the size and inner structure of spheroids grown from WM793b and WM983b melanoma cells over up to 24 days.

Code, data, and interactive figures are available as a Julia module on GitHub:

Browning AP (2021) Github ID v.0.6.2. Quantitative analysis of tumour spheroid structure. https://github.com/ap-browning/Spheroids

(copy archived here)

Code used to process the experimental images is available on Zenodo:

Browning AP, Murphy RJ (2021) Zenodo Image processing algorithm to identify structure of tumour spheroids with cell cycle labelling. https://doi.org/10.5281/zenodo.5121093

Access rights

Code available in Zenodo that was used to process the experimental images is licenced under an MIT License. All code and data available in GitHub is licenced under a Creative Commons CC-BY license.

Geographical area of data collection

kmlPolyCoords
153.031259,-27.499107
text
Translational Research Institute, Brisbane, Australia

Publications

AP Browning, JA Sharp, RJ Murphy, G Gunasingh, B Lawson, K Burrage, NK Haass, MJ Simpson. 2021 Quantitative analysis of tumour spheroid structure. eLife http://dx.doi.org/https://doi.org/10.7554/eLife.73020

Research areas

Cancer cell biology
Applied mathematics
Numerical and computational mathematics
Statistics

Cite this collection

Browning, Alexander; Sharp, Jesse; Murphy, Ryan; Gunasingh, Gency; Lawson, Brodie; Burrage, Kevin; Haass, Nikolas; Simpson, Matthew; (2022): Quantitative analysis of tumour spheroid structure. Queensland University of Technology. (Dataset) https://doi.org/10.25912/RDF_1646701077584

Related information

Partner institution

University of Queensland Diamantina Institute https://di.uq.edu.au/
Department of Computer Science, University of Oxford, United Kingdom https://www.cs.ox.ac.uk/

Data file types

.csv, Julia code

Copyright

© Queensland University of Technology, University of Queensland, University of Oxford 2022.

Dates of data collection

From 2018-02-05 to 2018-08-20

Connections

Has association with
Kevin Burrage  (Researcher)
Matthew Simpson  (Researcher)

Contacts

Name: Alexander Browning

Other

Date record created:
2022-02-02T10:55:26
Date record modified:
2022-03-08T12:55:41
Record status:
Published - Open Access