2021-06-25T11:45:40 n32117

Adhesion-driven deformation of Gram-negative envelopes on nanopatterned surfaces

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This dataset provides the results of ABAQUS/Standard (Dassault Systèmes Simulia, Johnston, RI) simulations of Gram-negative bacterial envelopes deforming on nanopatterned surfaces. It is an accompanyment to the article 'Mechanics of Bacterial Interaction and Death on Nanopatterned Surfaces'. 

The dataset is in the form of six spreadsheets, which together cover three different parameters of the interaction: the effect of envelope stiffness, nanopillar centre spacing, and nanopillar radius. In addition to the results, details of the simulation process and various parameters are embedded within each spreadsheet. The dataset also includes the raw micrographs from the LIVE/DEAD assay, provided as a separate Word document file. 

Access rights

The owner of this data collection reserves their right to provide access to the data by negotiation.

Geographical area of data collection

The data was collected on a desktop computer at the Queensland University of Technology (QUT) Garden's Point campus, using the High Performance Computing (HPC) facility.


Velic, Amar, Hasan, Jafar, Li, Zhiyong, & Yarlagadda, Prasad K.D.V. (2021) Mechanics of Bacterial Interaction and Death on Nanopatterned Surfaces. Biophysical Journal, 120(2), pp. 217-231. https://eprints.qut.edu.au/208409/

Research areas

Nanopatterned surfaces
Finite element method
Cell mechanics
Bactericidal activity

Cite this collection

Velic, Amar; Hasan, Jafar; (2021): Adhesion-driven deformation of Gram-negative envelopes on nanopatterned surfaces. Queensland University of Technology. (Dataset) https://doi.org/10.25912/RDF_1623968552840

Data file types

Data files are in Microsoft Excel (.xlsx) and Word format (.docx).


Creative Commons Attribution-NonCommercial 4.0 (CC-BY-NC)


© Queensland University of Technology, 2021.

Dates of data collection

From 2020-04-17 to 2020-11-07


Has association with
Prasad Yarlagadda  (Researcher)
Zhiyong Li  (Researcher)
Has chief investigator
Amar Velic  (Researcher)


Name: Mr. Amar Velic


Date record created:
Date record modified:
Record status:
Published - Open Access