Liquid chromatography ozone-induced dissociation mass spectrometry data - fatty acid discoveries in the human lipidome (OzFAD workflow)

Name: Liquid chromatography ozone-induced dissociation mass spectrometry data - fatty acid discoveries in the human lipidome (OzFAD workflow)
Creator: Dr Jan Philipp Menzel
License: http://creativecommons.org/licenses/by-nc-nd/4.0/
Keywords: Fatty acid,LC-MS,Ozon-induced dissociation,Physical chemistry,MCF7,Analytical chemistry,Skyline,Other chemical sciences,Human plasma,LNCaP,SCD-1,Cancer,Non-methylene interrupted fatty acid,Lipidomics,research data,data collections,research project

Menzel, Jan Philipp; Young, Reuben S.E.; Benfield, Aurelie H.; Scott, Julia S.; Butler, Lisa M.; Henriques, Sonia T.; Poad, Berwyck L.J.; Blanksby, Stephen J.

doi:10.25912/RDF_1667992514317

Liquid chromatography ozone-induced dissociation mass spectrometry data - fatty acid discoveries in the human lipidome (OzFAD workflow)

Viewed: 1308

The data collection presented here underpins the following paper:

OzFAD: Ozone-enabled fatty acid discovery reveals unexpected diversity in the human lipidome. Jan Philipp Menzel, Reuben S.E. Young, Aurélie H. Benfield, Julia Scott, Lisa M. Butler, Sónia Troeira Henriques, Berwyck L.J. Poad, Stephen J. Blanksby. bioRxiv 2022.10.24.513604; doi: https://doi.org/10.1101/2022.10.24.513604

Code availability statement: Python source code, Windows batch files and associated files are publicly available at: github.com/jphmenzel/jpmlipidomics.

For more information on data analysis, please read the 'General data analysis', 'Data analysis protocol for direct infusion by loop injection', 'Data analysis protocol for data Independent acquisition; UPLC-OzID-MS' and 'Data analysis protocol for data dependent acquisition; UPLC-OzID-MS/MS' sections of the associated paper.

Geographical area of data collection

kmlPolyCoords

153.029197,-27.478244

Publications

OzFAD: Ozone-enabled fatty acid discovery reveals unexpected diversity in the human lipidome. Jan Philipp Menzel, Reuben S.E. Young, Aurélie H. Benfield, Julia Scott, Lisa M. Butler, Sónia Troeira Henriques, Berwyck L.J. Poad, Stephen J. Blanksby bioRxiv 2022.10.24.513604; doi: http://dx.doi.org/10.1101/2022.10.24.513604

Research areas

Fatty acid

LC-MS

Ozon-induced dissociation

Physical chemistry

MCF7

Analytical chemistry

Skyline

Other chemical sciences

Human plasma

LNCaP

SCD-1

Cancer

Non-methylene interrupted fatty acid

Lipidomics

Cite this collection

Menzel, Jan Philipp; Young, Reuben S.E.; Benfield, Aurelie H.; Scott, Julia S.; Butler, Lisa M.; Henriques, Sonia T.; Poad, Berwyck L.J.; Blanksby, Stephen J.; (2022): Liquid chromatography ozone-induced dissociation mass spectrometry data - fatty acid discoveries in the human lipidome (OzFAD workflow). Queensland University of Technology. (Dataset) https://doi.org/10.25912/RDF_1667992514317

Partner institution

South Australian Health and Medical Research Institute, Adelaide https://sahmri.org.au/

Translational Research Institute, Brisbane https://www.tri.edu.au/translational-research-institute-australia

South Australian Immunogenomics Cancer Institute and Freemasons Centre for Male Health and Wellbeing, University of Adelaide https://www.adelaide.edu.au/saigenci/about-saigenci

Access the data

https://data.researchdatafinder.qut.edu.au/dataset/ozfad--ozone-enabled-fatty3

Data file types

Raw data (Waters Synapt G2-Si LC-OzID-MS and direct infusion MS acquisitions) and transition lists that can be used to view the raw data in Skyline (Skyline Mass Spectrometry Environment).