The Invertebrates & Microbiology Group Pipelines

Viewed: 1974

Bash and R pipelines from the Invertebrates & Microbiology Group to help make data analysis easy.

These pipelines were built to orginally analyse baculoviruses and are essentially wrappers for existing software but pre-optomised to help get rid of any guess work. The pipelines require various software to be pre-installed before running so it is essential that individual readme files are read and understood. If using the pipelines, please cite them and cite the software it uses.

Publications

Complete Genome Sequences of Helicoverpa armigera Single Nucleopolyhedrovirus Strains AC53 and H25EA1 from Australia http://dx.doi.org/10.1128/genomeA.01083-15

Complete Genome Sequences of Seven Helicoverpa armigera SNPV-AC53-Derived Strains http://dx.doi.org/ 10.1128/genomeA.00260-16

Complete Genome Sequences of Four Isolates of Plutella xylostella Granulovirus http://dx.doi.org/10.1128/genomeA.00633-16

MetaGaAP: A Novel Pipeline to Estimate Community Composition and Abundance from Non-Model Sequence Data. http://dx.doi.org/10.3390/biology6010014

Comparative Analysis of HaSNPV-AC53 and Derived Strains http://dx.doi.org/10.3390/v8110280

Research areas

Baculovirus, Bash, R, IMG-GAP, IMG-AP, IMG-R

Cite this collection

Noune,Christopher. (2016): The Invertebrates & Microbiology Group Pipelines. [Queensland University of Technology]. https://doi.org/10.4225/09/58252cff276b0