HaSNPV-AC53 Genotyping and Abundance Datasets
Datasets described in this record refer to chapters 7 and 9 of the thesis 'Dynamics, Diversity and Evolution of Baculoviruses' by Christopher Noune.
Chapter 7 - The 'Time Course BRO-A Abundances' and 'Time Course Distance Matrix' dataset contains, nucleotide similarity, raw read counts and relative abundances of genotypes identified with the HaSNPV-AC53 isolate during the infection cycle. Genotypes were identified using MetaGaAP and are available for download in the 'Baculovirus Genotyping Database'. MetaGaAP can be downloaded from https://github.com/CNoune/IMG_pipelines.
Chapter 9 - The Cluster datasets contain the k-means clustering of genotypes and relative abundances identified within the HaSNPV-AC53 isolate and selection pressured derivied strains. Polymorphisms were identified using the GATK HaplotypeCaller.
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Creative Commons Attribution-No Derivatives 4.0 (CC-BY-ND)