2017-07-21T14:12:30 n13986

HaSNPV-AC53 Genotyping and Abundance Datasets

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Datasets described in this record refer to chapters 7 and 9 of the thesis 'Dynamics, Diversity and Evolution of Baculoviruses' by Christopher Noune.

Chapter 7 - The 'Time Course BRO-A Abundances' and 'Time Course Distance Matrix' dataset contains, nucleotide similarity, raw read counts and relative abundances of genotypes identified with the HaSNPV-AC53 isolate during the infection cycle. Genotypes were identified using MetaGaAP and are available for download in the 'Baculovirus Genotyping Database'. MetaGaAP can be downloaded from https://github.com/CNoune/IMG_pipelines.

Chapter 9 - The Cluster datasets contain the k-means clustering of genotypes and relative abundances identified within the HaSNPV-AC53 isolate and selection pressured derivied strains. Polymorphisms were identified using the GATK HaplotypeCaller.

Access rights

The owner of this data retains copyright. No derivatives from the data may be distributed.

Geographical area of data collection

kmlPolyCoords
152.991212,-27.335337

Publications

Christopher Noune - Author publications on QUT ePrints http://eprints.qut.edu.au/view/person/Noune,_Christopher.html
Caroline Hauxwell - Author publications on QUT ePrints http://eprints.qut.edu.au/view/person/Hauxwell,_Caroline.html

Research areas

MetaGaAP
Baculovirus
HaSNPV-AC53

Cite this collection

Noune,Christopher; Hauxwell,Caroline. (2017): HaSNPV-AC53 Genotyping and Abundance Datasets . [Queensland University of Technology]. http://dx.doi.org/10.4225/09/595f00367d2cf

Licence


Creative Commons Attribution-No Derivatives 4.0 (CC-BY-ND)
http://creativecommons.org/licenses/by-nd/4.0/

Copyright

© Christopher Noune & Caroline Hauxwell, 2017

Dates of data collection

From 13-01-2014 to 10-02-2017

Contacts

Name: Associate Professor Caroline Hauxwell

Other

Date record created:
2017-07-19T14:08:23
Date record modified:
2017-07-21T14:12:30
Record status:
Published - Open Access